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國網中心已在主機上安裝了下列的資料庫, 如有其他需求請來信告知

資料庫

ENSEMBL 資料庫:

若需要使用,請來信洽詢

Species Data size (Gb)
Ailuropoda melanoleuca 7.1
Anas platyrhynchos 4.6
Anolis carolinensis 8.5
Astyanax mexicanus 5.8
Bos taurus 61.3
Caenorhabditis elegans 0.5
Callithrix jacchus 8.2
Canis familiaris 12.3
Cavia porcellus 7.2
Chlorocebus sabaeus 7.5
Choloepus hoffmanni 4.1
Ciona intestinalis 4.4
Ciona savignyi 2.8
Danio rerio 10.7
Dasypus novemcinctus 10.8
Dipodomys ordii 10.2
Drosophila melanogaster 10.9
Echinops telfairi 5.8
Equus caballus 10.7
Erinaceus europaeus 7.4
Felis catus 8.2
Ficedula albicollis 7.6
Gadus morhua 5.1
Gallus gallus 15.7
Gasterosteus aculeatus 4.9
Gorilla gorilla 8.2
Homo sapiens 588.0
Ictidomys tridecemlineatus 8.0
Latimeria chalumnae 8.6
Lepisosteus oculatus 6.4
Loxodonta africana 7.4
Macaca mulatta 9.1
Macropus eugenii 5.9
Meleagris gallopavo 4.2
Microcebus murinus 5.4
Monodelphis domestica 11.3
Mus musculus 108.9
Mustela putorius 13.7
Myotis lucifugus 6.8
Nomascus leucogenys 8.9
Ochotona princeps 9.0
Oreochromis niloticus 11.6
Ornithorhynchus anatinus 9.1
Oryctolagus cuniculus 9.1
Oryzias latipes 4.4
Otolemur garnettii 7.6
Ovis aries 32.3
Pan troglodytes 12.4
Papio anubis 9.5
Pelodiscus sinensis 8.1
Petromyzon marinus 3.9
Poecilia formosa 6.5
Pongo abelii 15.5
Procavia capensis 5.6
Pteropus vampyrus 5.7
Rattus norvegicus 17.4
Saccharomyces cerevisiae 0.6
Sarcophilus harrisii 8.9
Sorex araneus 5.5
Sus scrofa 24.0
Taeniopygia guttata 6.7
Takifugu rubripes 4.5
Tarsius syrichta 5.6
Tetraodon nigroviridis 4.4
Tupaia belangeri 6.5
Tursiops truncatus 6.2
Vicugna pacos 4.4
Xenopus tropicalis 10.6
Xiphophorus maculatus 10.7
Sub-total 1309.2
Multi-species
Ancestral 47.5
Archive 0.0
Compara 271.2
Mart 709.5
Ontology 0.2
Production 0.0
Stable 3.0
Website 0.1
Total 2340.8

 

Blast Reference 資料庫:

ALPS上的上有:

來源 版本 位置 大小
Environmental protein seq. 2014/8/18 /pkg/biology/blastdb/NCBI_env_nr 2.6G
Environmental nucleotide seq 2014/8/18 /pkg/biology/blastdb/NCBI_env_nt 7.2G
Human subset of the EST database 2014/8/18 /pkg/biology/blastdb/NCBI_est_human 2.8G
Mouse subset of the EST database 2014/8/18 /pkg/biology/blastdb/NCBI_est_mouse 1.7G
Non-human and non-mouse subset of the EST database 2014/8/18 /pkg/biology/blastdb/NCBI_est_other 23G
Genomic survery sequences 2014/8/18 /pkg/biology/blastdb/NCBI_gss 14G
High throughput genomic seq. 2014/8/18 /pkg/biology/blastdb/NCBI_htgs 6.3G
Human RefSeq chromosome 2014/8/18 /pkg/biology/blastdb/NCBI_human_genomic 9.6G
Non-redundant protein database 2014/8/18 /pkg/biology/blastdb/NCBI_nr 43G
Nuclrotide seq. database 2014/8/18 /pkg/biology/blastdb/NCBI_nt 22G
RefSeq chromosome records for organisms other than Human 2014/8/18 /pkg/biology/blastdb/NCBI_other_genomic 56G
Patent protein seq. database 2014/8/18 /pkg/biology/blastdb/NCBI_pataa 829M
Patent nucleotide seq. database 2014/8/18 /pkg/biology/blastdb/NCBI_patnt 7.8G
Protein seq. from PDB protein structures 2014/8/18 /pkg/biology/blastdb/NCBI_pdbaa 5.2M
Nucleotide seq. from PDB nucleic acid structures 2014/8/18 /pkg/biology/blastdb/NCBI_pdbnt 2.8M
NCBI genomic reference sequences 2014/8/18 /pkg/biology/blastdb/NCBI_refseq_genomic 109G
NCBI protein reference sequences 2014/8/18 /pkg/biology/blastdb/NCBI_refseq_protein 22G
NCBI Transcript reference sequences 2014/8/18 /pkg/biology/blastdb/NCBI_refseq_rna 5.5G
Database for seq. tag site entries 2014/8/18 /pkg/biology/blastdb/NCBI_sts 456M
Swiss-prot database 2014/8/18 /pkg/biology/blastdb/NCBI_swissprot 5M
Additional taxonomy information for the formatted database 2014/8/18 /pkg/biology/blastdb/NCBI_taxdb 78M
Whole genome shotgun genome assemblies 2014/8/18 /pkg/biology/blastdb/NCBI_wgs 194G
Total 527.7G

 

 

 

 

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