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國網中心已在主機上安裝了下列的資料庫, 如有其他需求請來信告知

資料庫

ENSEMBL 資料庫:

若需要使用,請來信洽詢

Species Data size (Gb)
Ailuropoda melanoleuca 7.1
Anas platyrhynchos 4.6
Anolis carolinensis 8.5
Astyanax mexicanus 5.8
Bos taurus 61.3
Caenorhabditis elegans 0.5
Callithrix jacchus 8.2
Canis familiaris 12.3
Cavia porcellus 7.2
Chlorocebus sabaeus 7.5
Choloepus hoffmanni 4.1
Ciona intestinalis 4.4
Ciona savignyi 2.8
Danio rerio 10.7
Dasypus novemcinctus 10.8
Dipodomys ordii 10.2
Drosophila melanogaster 10.9
Echinops telfairi 5.8
Equus caballus 10.7
Erinaceus europaeus 7.4
Felis catus 8.2
Ficedula albicollis 7.6
Gadus morhua 5.1
Gallus gallus 15.7
Gasterosteus aculeatus 4.9
Gorilla gorilla 8.2
Homo sapiens 588.0
Ictidomys tridecemlineatus 8.0
Latimeria chalumnae 8.6
Lepisosteus oculatus 6.4
Loxodonta africana 7.4
Macaca mulatta 9.1
Macropus eugenii 5.9
Meleagris gallopavo 4.2
Microcebus murinus 5.4
Monodelphis domestica 11.3
Mus musculus 108.9
Mustela putorius 13.7
Myotis lucifugus 6.8
Nomascus leucogenys 8.9
Ochotona princeps 9.0
Oreochromis niloticus 11.6
Ornithorhynchus anatinus 9.1
Oryctolagus cuniculus 9.1
Oryzias latipes 4.4
Otolemur garnettii 7.6
Ovis aries 32.3
Pan troglodytes 12.4
Papio anubis 9.5
Pelodiscus sinensis 8.1
Petromyzon marinus 3.9
Poecilia formosa 6.5
Pongo abelii 15.5
Procavia capensis 5.6
Pteropus vampyrus 5.7
Rattus norvegicus 17.4
Saccharomyces cerevisiae 0.6
Sarcophilus harrisii 8.9
Sorex araneus 5.5
Sus scrofa 24.0
Taeniopygia guttata 6.7
Takifugu rubripes 4.5
Tarsius syrichta 5.6
Tetraodon nigroviridis 4.4
Tupaia belangeri 6.5
Tursiops truncatus 6.2
Vicugna pacos 4.4
Xenopus tropicalis 10.6
Xiphophorus maculatus 10.7
Sub-total 1309.2
Multi-species
Ancestral 47.5
Archive 0.0
Compara 271.2
Mart 709.5
Ontology 0.2
Production 0.0
Stable 3.0
Website 0.1
Total 2340.8

 

Blast Reference 資料庫:

TAIWANIA上的上有:

來源 版本 位置 大小
Conserved Domains Database 2017-03-22 /project/GP1/BLASTDB/db/cdd_delta 3.1G
Environmental protein seq. 2018-12-06 /project/GP1/BLASTDB/db/env_nr 2.9G
Environmental nucleotide seq 2018-12-29 /project/GP1/BLASTDB/db/env_nt 62G
Human subset of the EST database 2018-12-13 /project/GP1/BLASTDB/db/est_human 2.9G
Mouse subset of the EST database 2018-12-13 /project/GP1/BLASTDB/db/est_mouse 1.7G
Non-human and non-mouse subset of the EST database 2018-12-04 /project/GP1/BLASTDB/db/est_others 23G
Genomic survery sequences 2018-10-31 /project/GP1/BLASTDB/db/gss 16G
High throughput genomic seq. 2018-12-05 /project/GP1/BLASTDB/db/htgs 6.8G
Human RefSeq chromosome 2017-07-23 /project/GP1/BLASTDB/db/human_genomic 15G
Landmark Database 2019-01-04 /project/GP1/BLASTDB/db/landmark 331M
Nuclrotide seq. database 2019-01-01 /project/GP1/BLASTDB/db/nt 58G
Non-redundant protein database 2019-01-04 /project/GP1/BLASTDB/db/nr 179G
RefSeq chromosome records for organisms other than Human 2017-06-25 /project/GP1/BLASTDB/db/other_genomic 144G
Patent protein seq. database 2018-12-15 /project/GP1/BLASTDB/db/pataa 1.4G
Patent nucleotide seq. database 2018-12-29 /project/GP1/BLASTDB/db/patnt 13G
Protein seq. from PDB protein structures 2019-01-04 /project/GP1/BLASTDB/db/pdbaa 133M
Nucleotide seq. from PDB nucleic acid structures 2019-01-04 /project/GP1/BLASTDB/db/pdbnt 5.5M
Prokaryotic RefSeq Genomes 2018-10-18 /project/GP1/BLASTDB/db/ref_prok_rep_genomes 6.3G
Genomic sequences for selected genes records from NCBI RefSeq project 2019-01-05 /project/GP1/BLASTDB/db/refseqgene 153M
NCBI genomic reference sequences 2019-01-10 /project/GP1/BLASTDB/db/refseq_genomic 342G
NCBI protein reference sequences 2019-01-07 /project/GP1/BLASTDB/db/refseq_protein 74G
NCBI Transcript reference sequences 2019-01-13 /project/GP1/BLASTDB/db/refseq_rna 20G
NCBI Viral Genomes 2018-12-30 /project/GP1/BLASTDB/db/ref_viruses_rep_genomes 66M
Database for seq. tag site entries 2018-11-24 /project/GP1/BLASTDB/db/sts 454M
Swiss-prot database 2019-01-04 /project/GP1/BLASTDB/db/swissprot 328M
Additional taxonomy information for the formatted database 2019-01-04 /project/GP1/BLASTDB/db/taxdb 142M
Protein sequences from annotated on the transcriptome shotgun assembly. 2018-10-30 /project/GP1/BLASTDB/db/tsa_nr 1.5G
Sequences from the TSA division of GenBank, EMBL, And DDBJ 2018-12-15 /project/GP1/BLASTDB/db/tsa_nt 13G
Vector sequences from 2010 2010-01-13 /project/GP1/BLASTDB/db/vector 1.4M
Total 984G

 

 

 

 

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