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軟體放置位置在/pkg/biology 下

IDDateProgramVervionPath
12016/2/1python2.7.5/pkg/biology/python/python_2.7.5
22016/2/1python3.5.1/pkg/biology/python/python_3.5.1
32016/2/2Bowtie2.2.6/pkg/biology/Bowtie/bowtie_2.2.6
42016/2/2BLAST+2.3.0+/pkg/biology/BLAST+/blast_2.3.0+
52016/2/2bedtools2.25.0/pkg/biology/bedtools/bedtools_2.25.0
62016/2/2ABySS1.9.0/pkg/biology/ABySS/abyss_1.9.0
72016/2/2ALLPATHS-LG52488/pkg/biology/ALLPATHS-LG/allpathslg_52488
82016/2/2GATK3.5/pkg/biology/GATK/gatk_3.5
92016/2/2BWA0.7.12/pkg/biology/BWA/bwa_0.7.12
102016/2/2BLAST2.2.9/pkg/biology/BLAST/blast_2.2.9
112016/2/4PyRosettamonolith/pkg/biology/PyRosetta/PyRosetta_monolith
122016/2/4PyRosettanamespace/pkg/biology/PyRosetta/PyRosetta_namespace
132016/2/4Rosetta2016.02_prebuilt/pkg/biology/Rosetta/rosetta_2016.02_prebuilt
142016/2/19NAMD2.11_Linux-x86_64-ibverbs-smp/pkg/biology/NAMD/NAMD_2.11_Linux-x86_64-ibverbs-smp
152016/2/19NAMD2.11_Linux-x86_64-multicore/pkg/biology/NAMD/NAMD_2.11_Linux-x86_64-multicore
162016/2/19PHENIX1.10.1-2155-intel-linux-2.6-x86_64_old/pkg/biology/PHENIX/phenix_1.10.1-2155-intel-linux-2.6-x86_64_old
172016/2/24Rosetta2016.02/pkg/biology/Rosetta/rosetta_2016.02
182016/3/1SAMtools1.2+/pkg/biology/SAMtools/samtools_1.2+
192016/3/1SAMtools1.2/pkg/biology/SAMtools/samtools_1.2
202016/3/1SAMtools0.1.16/pkg/biology/SAMtools/samtools_0.1.16
212016/3/1MUMmer3.23/pkg/biology/MUMmer/MUMmer_3.23
222016/3/1bamUtilv1.0.13/pkg/biology/bamUtil/bamutil_v1.0.13
232016/3/1BamToolsv2.4.0/pkg/biology/BamTools/bamtools_v2.4.0
242016/3/1PyMOL1.3r1/pkg/biology/PyMOL/pymol_1.3r1
252016/3/2Bowtie1.1.2/pkg/biology/Bowtie/bowtie_1.1.2
262016/3/2plink1.07-x86_64/pkg/biology/plink/plink_1.07-x86_64
272016/3/2Perl5.16.3/pkg/biology/Perl/perl_5.16.3
282016/3/2GapFillerv1.10/pkg/biology/GapFiller/GapFiller_v1.10
292016/3/2miRDeep001_version/pkg/biology/miRDeep/mirdeep_001_version
302016/3/2miRDeepori_version/pkg/biology/miRDeep/mirdeep_ori_version
312016/3/2miRDeep2015_jan/pkg/biology/miRDeep/mirdeep_2015_jan
322016/3/2miRDeep002_version/pkg/biology/miRDeep/mirdeep_002_version
332016/3/2TopHat2.1.1/pkg/biology/TopHat/tophat_2.1.1
342016/3/2FASTX-TOOLkit0.0.14/pkg/biology/FASTX-TOOLkit/fastxtoolkit_0.0.14
352016/3/2Ensembl_pipeline83/pkg/biology/Ensembl_pipeline/Ensembl_83
362016/3/2Trinity2.1.1/pkg/biology/Trinity/trinity_2.1.1
372016/3/3HMMER3.1b2/pkg/biology/HMMER/hmmer_3.1b2
382016/3/3VelvetOptimiser2.2.5/pkg/biology/VelvetOptimiser/velvetoptimiser_2.2.5
392016/3/3Velvet1.2.10-cat40kmer250omp/pkg/biology/Velvet/velvet_1.2.10-cat40kmer250omp
402016/3/3Picard_Tools2.1.0/pkg/biology/Picard_Tools/picardtools_2.1.0
412016/3/3Exonerate2.2.0/pkg/biology/Exonerate/exonerate_2.2.0
422016/3/3TMHMM2.0c/pkg/biology/TMHMM/tmhmm_2.0c
432016/3/3JellyFish2.2.4/pkg/biology/JellyFish/jellyfish_2.2.4
442016/3/3Trimmomatic0.35/pkg/biology/Trimmomatic/trimmomatic_0.35
452016/3/3Tandem_Repeats_Finder409/pkg/biology/Tandem_Repeats_Finder/trf_409
462016/3/4RMBlast2.2.28/pkg/biology/RMBlast/rmblastn_2.2.28
472016/3/4LaTex2015/pkg/biology/LaTex/latex_2015
482016/3/4NCBI_NGS_API1.2.3/pkg/biology/NCBI_NGS_API/ngs_1.2.3
492016/3/4NCBI_VDB2.5.8/pkg/biology/NCBI_VDB/ncbivdb_2.5.8
502016/3/4R3.2.3/pkg/biology/R/R_3.2.3
512016/3/7VirtualNanoLabATK-2015.0/pkg/biology/VirtualNanoLab/VNL_ATK-2015.0
522016/3/7UCSF_Chimera2016.03.01/pkg/biology/UCSF_Chimera/chimera_2016.03.01
532016/3/7UCSF_Chimeraalpha_2016_03_01/pkg/biology/UCSF_Chimera/chimera_alpha_2016_03_01
542016/3/7UCSF_Chimera1.10.2/pkg/biology/UCSF_Chimera/chimera_1.10.2
552016/3/7VMD1.9.2/pkg/biology/VMD/vmd_1.9.2
562016/3/7VMD1.9.2_text/pkg/biology/VMD/vmd_1.9.2_text
572016/3/7PHENIXdev_2306/pkg/biology/PHENIX/phenix_dev_2306
582016/3/8PyMOL1.8.0.0/pkg/biology/PyMOL/pymol_1.8.0.0
592016/3/8PyMOLphenix_1.8.0.0/pkg/biology/PyMOL/pymol_phenix_1.8.0.0
602016/3/11schrodingerJan-16/pkg/biology/schrodinger/schrodinger_2016-1
612016/3/11DesmondApr-15/pkg/biology/Desmond/schrodinger_2015-4
622016/3/11Desmondv44017/pkg/biology/Desmond/desmond_v44017
632016/3/15BFCv1/pkg/biology/BFC/bfc_v1
642016/3/15Rcorrector1.0.1/pkg/biology/Rcorrector/rcorrector_1.0.1
652016/3/15PEAR0.9.6/pkg/biology/PEAR/pear_0.9.6
662016/3/15PANDAseq2.8.1/pkg/biology/PANDAseq/pandaseq_2.8.1
672016/3/17Desmond3.6.1.1/pkg/biology/Desmond/desmond_3.6.1.1
682016/3/17R3.1.2/pkg/biology/R/R_3.1.2
692016/3/21SAMtools1.2+_silent/pkg/biology/SAMtools/samtools_1.2+_silent
702016/3/22ANNOVAR2016Feb01/pkg/biology/ANNOVAR/annovar_2016Feb01
712016/3/22BCFtools1.3/pkg/biology/BCFtools/bcftools_1.3
722016/3/22NGS_QC_Toolkitv2.3/pkg/biology/NGS_QC_Toolkit/ngsqctoolkit_v2.3
732016/3/22VarScanv2.3.9/pkg/biology/VarScan/varscan_v2.3.9
742016/3/22GMAP_GSNAP2015/12/31/pkg/biology/GMAP_GSNAP/gmap_2015-12-31
752016/3/22MIRA4.0.2/pkg/biology/MIRA/mira_4.0.2
762016/3/22STAR2.5/pkg/biology/STAR/STAR_2.5
772016/3/22Cufflinks2.2.1/pkg/biology/Cufflinks/cufflinks_2.2.1
782016/3/22MethPipe3.4.2/pkg/biology/MethPipe/methpipe_3.4.2
792016/3/22JOE4.2/pkg/biology/JOE/joe_4.2
802016/3/22MATLAB_RuntimeR2016a/pkg/biology/MATLAB_Runtime/MCR_R2016a
812016/3/22MACS22.1.1.20160309/pkg/biology/MACS2/MACS2_2.1.1.20160309
822016/3/22REDItools1.0.4/pkg/biology/REDItools/REDItools_1.0.4
832016/3/22SOAPdenovo2/pkg/biology/SOAPdenovo/SOAPdenovo_2
842016/3/22MACE1.2/pkg/biology/MACE/mace_1.2
852016/3/22Subread1.5.0p1/pkg/biology/Subread/subread_1.5.0p1
862016/3/22GeneMarksuit_v.4.30/pkg/biology/GeneMark/genemark_suit_v.4.30
872016/3/22Blat35/pkg/biology/Blat/blat_35
882016/3/23SDSL2.0.3/pkg/biology/SDSL/sdsl_2.0.3
892016/3/27ESS15.09-2/pkg/biology/ESS/ess_15.09-2
902016/3/29GeneTorrent3.8.7/pkg/biology/GeneTorrent/genetorrent_3.8.7
912016/3/31nano2.5.3/pkg/biology/nano/nano_2.5.3
922016/4/7pindelv0.2.5b8/pkg/biology/pindel/pindel_v0.2.5b8
932016/4/11FastQCv0.11.5/pkg/biology/FastQC/fastqc_v0.11.5
942016/4/13OPAM1.2.2/pkg/biology/OPAM/opam_1.2.2
952016/4/13OCaml4.02.3/pkg/biology/OCaml/ocaml_4.02.3
962016/4/13PhyloCSF20121028/pkg/biology/PhyloCSF/PhyloCSF_20121028
972016/4/26UCSC_Utilitiesv328/pkg/biology/UCSC_Utilities/ucscutilities_v328
982016/5/2SignalP4/pkg/biology/SignalP/signalp_4.0
992016/5/2GPS-CCD1/pkg/biology/GPS-CCD/gpsccd_1.0
1002016/5/2Phobius101/pkg/biology/Phobius/phobius_101
1012016/5/11swarm1.2.19/pkg/biology/swarm/swarm_1.2.19
1022016/5/11UCLUST1.2.21/pkg/biology/UCLUST/uclustq_1.2.21
1032016/5/11RAxML7.3.0/pkg/biology/RAxML/RAxML_7.3.0
1042016/5/11RDPtools20160511/pkg/biology/RDPtools/RDPTools_20160511
1052016/5/11MUSCLEv3.8.1551/pkg/biology/MUSCLE/muscle_v3.8.1551
1062016/5/11cd-hit2007-0131/pkg/biology/cd-hit/cd-hit_2007-0131
1072016/5/11QIIME2/pkg/biology/QIIME/qiime_2
1082016/5/11SortMeRNA2/pkg/biology/SortMeRNA/sortmerna_2.0
1092016/5/11clearcut1.0.9/pkg/biology/clearcut/clearcut_1.0.9
1102016/5/11infernal1.0.2/pkg/biology/infernal/infernal_1.0.2
1112016/5/11SumaclustV1.0.00/pkg/biology/Sumaclust/sumapackage_V1.0.00
1122016/5/11cdbtools0.99/pkg/biology/cdbtools/cdbtools_0.99
1132016/5/11ChimeraSlayer20091205/pkg/biology/ChimeraSlayer/chimeraslayer_20091205
1142016/5/11USEARCH8.1.1861/pkg/biology/USEARCH/usearch_8.1.1861
1152016/5/17Octave4.0.2/pkg/biology/Octave/octave_4.0.2
1162016/5/17BLAST+blastdb/pkg/biology/BLAST+/update_blastdb
1172016/5/20IGV2.3.72/pkg/biology/IGV/IGV_2.3.72
1182016/5/24java1.8.0_92/pkg/biology/java/jdk_1.8.0_92
1192016/5/24OpenMM7.0.0/pkg/biology/OpenMM/openmm_7.0.0
1202016/5/24ovito2.6.2-x86_64/pkg/biology/ovito/ovito_2.6.2-x86_64
1212016/6/24kentUntils20160624/pkg/biology/kentUntils/kentUtils_20160624
1222016/6/29tRNAscanSE-1.3.1/pkg/biology/tRNAscan/tRNAscan_SE-1.3.1
1232016/7/5InterProScan5.17-56.0/pkg/biology/InterProScan/interproscan_5.17-56.0
1242016/7/12ATSAS2.7.2-5/pkg/biology/ATSAS/ATSAS_2.7.2-5
1252016/7/22RTAX0.984/pkg/biology/RTAX/rtax_0.984
1262016/7/22cd-hit-otuillumina-0.0.1/pkg/biology/cd-hit-otu/cd-hit-otu_illumina-0.0.1
1272016/7/22InterProScan5.19-58.0/pkg/biology/InterProScan/interproscan_5.19-58.0
1282016/7/22GeneMarkes_v.4.32/pkg/biology/GeneMark/genemark_es_v.4.32
1292016/8/4EMAN22.12/pkg/biology/EMAN2/EMAN2_2.12
1302016/8/11RELION1.4/pkg/biology/RELION/relion_1.4
1312016/8/12RELION1.4_intel/pkg/biology/RELION/relion_1.4_intel
1322016/8/19Tandem_Repeats_Finder404/pkg/biology/Tandem_Repeats_Finder/trf_404
1332016/8/22Augustus2.5.5/pkg/biology/Augustus/augustus_2.5.5
1342016/8/22RepeatMasker4.0.6/pkg/biology/RepeatMasker/repeatmasker_4.0.6
1352016/8/22MAKER2.31.8/pkg/biology/MAKER/maker_2.31.8
1362016/9/1Asperav3.6.2/pkg/biology/Aspera/aspera-connect_v3.6.2
1372016/9/8eHive2.4/pkg/biology/eHive/ensembl-hive_2.4
1382016/10/4SRAtoolkit2.7.0/pkg/biology/SRAtoolkit/sratoolkit_2.7.0
1392016/10/5GATK3.6/pkg/biology/GATK/gatk_3.6
1402016/10/21ARP_wARPwarp_7.6/pkg/biology/ARP_wARP/arp_warp_7.6
1412016/10/21cctbxdev_833/pkg/biology/cctbx/cctbx_dev_833
1422016/11/21mothur1.36.1/pkg/biology/mothur/mothur_1.36.1
1432016/11/22F-Seq1.84/pkg/biology/F-Seq/fseq_1.84
1442016/11/22F-Seq1.85/pkg/biology/F-Seq/fseq_1.85
1452016/12/2AmpliconNoise0/pkg/biology/AmpliconNoise/ampliconnoise_0
1462016/12/3gromacs2016.1_Oct28_d/pkg/biology/gromacs/gromacs_2016.1_Oct28_d
1472016/12/3plumed2.3b/pkg/biology/plumed/plumed_2.3b
1482016/12/3plumed2.2.3/pkg/biology/plumed/plumed_2.2.3
1492016/12/4gromacs4.6.7_d/pkg/biology/gromacs/gromacs_4.6.7_d
1502016/12/6python2.7.3/pkg/biology/python/python_2.7.3
1512016/12/7QIIME1.9.1/pkg/biology/QIIME/qiime_1.9.1
1522016/12/7USEARCH5.2.236/pkg/biology/USEARCH/usearch_5.2.236
1532016/12/19PLUMED2.2.3/pkg/biology/PLUMED/PLUMED_2.2.3
1542017/1/4Sambambav0.6.5/pkg/biology/Sambamba/sambamba_v0.6.5
1552017/1/17Wessim1/pkg/biology/Wessim/Wessim_1.0
1562017/1/17Wessimbeta/pkg/biology/Wessim/Wessim_beta
1572017/1/17GemSIMv1.6/pkg/biology/GemSIM/gemsim_v1.6
1582017/2/13AutoDockvina_1.1.2/pkg/biology/AutoDock/autodock_vina_1.1.2
1592017/2/13AutoDock4.2.6/pkg/biology/AutoDock/autodocksuite_4.2.6
1602017/3/9HISAT2.0.5/pkg/biology/HISAT/hisat_2.0.5
1612017/3/22EXCAVATORv2.2/pkg/biology/EXCAVATOR/EXCAVATOR_v2.2
1622017/3/22CoNIFERv0.2.2/pkg/biology/CoNIFER/conifer_v0.2.2
1632017/3/22XHMM20160104/pkg/biology/XHMM/xhmm_20160104
1642017/3/22Control-FREECv10.5/pkg/biology/Control-FREEC/control-freec_v10.5
1652017/3/22CNV-seq20140812/pkg/biology/CNV-seq/cnv-seq_20140812
1662017/3/22R3.3.3/pkg/biology/R/R_3.3.3

 

 

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