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軟體清單

軟體放置位置在/pkg/biology 下

IDDateProgramVervionPath
12011-01-27SOAP2v2.21/pkg/biology/SOAP2/SOAP2_v2.21
22012-07-06GemSIMv1.6/pkg/biology/GemSIM/GemSIM_v1.6
32013-07-08Athlates20140426/pkg/biology/Athlates/Athlates_20140426
42013-10-28SMaSHv1.0/pkg/biology/SMaSH/SMaSH_v1.0
52014-04-18MIRAv4.0.2/pkg/biology/MIRA/MIRA_v4.0.2
62014-04-30Cufflinksv2.2.1/pkg/biology/Cufflinks/Cufflinks_v2.2.1
72016-03-21Trimmomaticv0.36/pkg/biology/Trimmomatic/Trimmomatic_v0.36
82016-06-29BEASTv1.8.4/pkg/biology/BEAST/BEAST_v1.8.4
92016-09-07CNV-Simv0.9.2/pkg/biology/CNV-Sim/CNV-Sim_v0.9.2
102016-11-04GEMv3.4/pkg/biology/GEM/GEM_v3.4
112017-03-25ONCOCNVv6.8/pkg/biology/ONCOCNV/ONCOCNV_v6.8
122017-12-20Java8u162/pkg/biology/Java/jdk_8u162
132018-04-10BWAv0.7.17/pkg/biology/BWA/BWA_v0.7.17
142018-04-10Java10/pkg/biology/Java/jdk_10
152018-04-11SAMtoolsv1.8/pkg/biology/SAMtools/SAMtools_v1.8
162018-04-24Velvetv1.2.10/pkg/biology/Velvet/Velvet_v1.2.10
172018-04-24Bowtiev2.3.4.1/pkg/biology/Bowtie/Bowtie_v2.3.4.1
182018-04-25FREECv11.4/pkg/biology/FREEC/FREEC_v11.4
192018-04-26Pythonv3.6.5/pkg/biology/Python/Python_v3.6.5
202018-04-30DeepVariantv0.6.1_old/pkg/biology/DeepVariant/DeepVariant_v0.6.1_old
212018-05-11STARv2.6.0c/pkg/biology/STAR/STAR_v2.6.0c
222018-05-15OpenSlidev3.4.1/pkg/biology/OpenSlide/OpenSlide_v3.4.1
232018-05-15FastQCv0.11.7/pkg/biology/FastQC/FastQC_v0.11.7
242018-05-15Perlv5.26.2/pkg/biology/Perl/Perl_v5.26.2
252018-05-15PLINKv1.9/pkg/biology/PLINK/PLINK_v1.9
262018-05-15Asperav3.8.0/pkg/biology/Aspera/Aspera_v3.8.0
272018-05-15Picardv2.18.2/pkg/biology/Picard/Picard_v2.18.2
282018-05-16BEDToolsv2.27.1/pkg/biology/BEDTools/BEDTools_v2.27.1
292018-05-16Pythonv2.7.14/pkg/biology/Python/Python_v2.7.14
302018-05-16RazerSv3.5.8/pkg/biology/RazerS/RazerS_v3.5.8
312018-05-16CPLEXv12.8.0/pkg/biology/CPLEX/CPLEX_v12.8.0
322018-05-16UCSC_Utilities20180515/pkg/biology/UCSC_Utilities/Utilities_20180515
332018-05-17HLA-HDv1.1.0/pkg/biology/HLA-HD/HLA-HD_v1.1.0
342018-05-17Mantav1.4.0/pkg/biology/Manta/Manta_v1.4.0
352018-05-17ANNOVAR20180416/pkg/biology/ANNOVAR/ANNOVAR_20180416
362018-05-18samblasterv0.1.24/pkg/biology/samblaster/samblaster_v0.1.24
372018-05-18sambambav0.6.7/pkg/biology/sambamba/sambamba_v0.6.7
382018-05-18DeepVariantv0.6.1/pkg/biology/DeepVariant/DeepVariant_v0.6.1
392018-05-18Bazelparty/pkg/biology/Bazel/third_party
402018-05-21SRA_Toolkitv2.9.0/pkg/biology/SRA_Toolkit/SRAToolkit_v2.9.0
412018-05-21ClinEffv1.0h/pkg/biology/ClinEff/ClinEff_v1.0h
422018-05-21bcl2fastq2v2.20.0/pkg/biology/bcl2fastq2/bcl2fastq2_v2.20.0
432018-05-23TopHatv2.1.1/pkg/biology/TopHat/TopHat_v2.1.1
442018-05-23GCCv8.1.0/pkg/biology/GCC/GCC_v8.1.0
452018-05-25VCFtoolsv0.1.13/pkg/biology/VCFtools/VCFtools_v0.1.13
462018-05-25VarScanv2.3.9/pkg/biology/VarScan/VarScan_v2.3.9
472018-05-25SMALTv0.7.6/pkg/biology/SMALT/SMALT_v0.7.6
482018-05-25MEGAv7.0.14/pkg/biology/MEGA/MEGA_v7.0.14
492018-05-28MUMmerv3.23/pkg/biology/MUMmer/MUMmer_v3.23
502018-05-31gdc-clientv1.3.0/pkg/biology/gdc-client/gdc-client_v1.3.0
512018-06-14Strelkav2.9.4/pkg/biology/Strelka/Strelka_v2.9.4
522018-06-14Strelkav2.9.3/pkg/biology/Strelka/Strelka_v2.9.3
532018-06-22Rv3.5.0/pkg/biology/R/R_v3.5.0
542018-07-02HISAT2v2.1.0/pkg/biology/HISAT2/HISAT2_v2.1.0
552018-07-03dotnetv2.1.202_sdk/pkg/biology/dotnet/dotnet_v2.1.202_sdk
562018-07-04s3fsv1.83/pkg/biology/s3fs/s3fs_v1.83
572018-07-04BANv1/pkg/biology/BAN/BAN_v1
582018-07-04bamUtilv1.0.14/pkg/biology/bamUtil/bamUtil_v1.0.14
592018-07-05Perlv5.28.0/pkg/biology/Perl/Perl_v5.28.0
602018-07-05Mavenv3.5.4/pkg/biology/Maven/Maven_v3.5.4
612018-07-06Kouramiv0.9.6/pkg/biology/Kourami/Kourami_v0.9.6
622018-07-07Java8u181/pkg/biology/Java/jdk_8u181
632018-07-09MEGAv10.0.4/pkg/biology/MEGA/MEGA_v10.0.4
642018-07-13GATKv3.8/pkg/biology/GATK/GATK_v3.8
652018-07-13Pythonv2.7.15/pkg/biology/Python/Python_v2.7.15
662018-07-13BCFtoolsv1.8/pkg/biology/BCFtools/BCFtools_v1.8
672018-07-15s3cmdv2.0.2/pkg/biology/s3cmd/s3cmd_v2.0.2
682018-07-18HTSLIBv1.8/pkg/biology/HTSLIB/htslib_v1.8
692018-07-20CD-HITv4.6.8/pkg/biology/CD-HIT/CD-HIT_v4.6.8
702018-07-20HMMERv3.2.1/pkg/biology/HMMER/HMMER_v3.2.1
712018-07-24swarmv2.2.2/pkg/biology/swarm/swarm_v2.2.2
722018-07-25Rv3.2.3/pkg/biology/R/R_v3.2.3
732018-07-25MAFFTv7.402/pkg/biology/MAFFT/MAFFT_v7.402
742018-07-25RAxMLv8.2.12/pkg/biology/RAxML/RAxML_v8.2.12
752018-07-25FastTreev2.1.10/pkg/biology/FastTree/FastTree_v2.1.10
762018-07-25MrBayesv3.2.6/pkg/biology/MrBayes/MrBayes_v3.2.6
772018-07-26Minicondav4.5.4/pkg/biology/Miniconda/Miniconda3_v4.5.4
782018-07-26Minicondav4.5.4/pkg/biology/Miniconda/Miniconda2_v4.5.4
792018-07-26SQUIDv1.9g/pkg/biology/SQUID/SQUID_v1.9g
802018-07-27ROOTv6.14.02/pkg/biology/ROOT/ROOT_v6.14.02
812018-08-05Asperav3.7.7/pkg/biology/Aspera/Aspera_v3.7.7
822018-08-06Rosetta2018.09.60072/pkg/biology/Rosetta/rosetta_2018.09.60072
832018-08-06Canvasv1.38.0/pkg/biology/Canvas/Canvas_v1.38.0
842018-08-07Java10.0.2/pkg/biology/Java/jdk_10.0.2
852018-08-09BEASTv1.10.1/pkg/biology/BEAST/BEAST_v1.10.1
862018-08-10IGV2.4.13/pkg/biology/IGV/IGV_2.4.13
872018-08-13Dellyv0.7.8/pkg/biology/Delly/Delly_v0.7.8
882018-08-14SAMtoolsv1.9/pkg/biology/SAMtools/SAMtools_v1.9
892018-08-14IGVv2.4.14/pkg/biology/IGV/IGV_v2.4.14
902018-08-15STARv2.6.1a/pkg/biology/STAR/STAR_v2.6.1a
912018-08-15HTSLIBv1.2.1/pkg/biology/HTSLIB/HTSLIB_v1.2.1
922018-08-15Pindelv0.2.5b8/pkg/biology/Pindel/Pindel_v0.2.5b8
932018-08-17HLAminerv1.3.1/pkg/biology/HLAminer/HLAminer_v1.3.1
942018-08-20Picardv2.18.11/pkg/biology/Picard/Picard_v2.18.11
952018-08-20FREECv11.5/pkg/biology/FREEC/FREEC_v11.5
962018-08-21VSEARCHv2.8.1/pkg/biology/VSEARCH/VSEARCH_v2.8.1
972018-08-21Mothurv1.40.5/pkg/biology/Mothur/Mothur_v1.40.5
982018-08-22Minimap2v2.12/pkg/biology/Minimap2/Minimap2_v2.12
992018-08-22FALCON2.1/pkg/biology/FALCON/falcon_2.1
1002018-08-22FALCON1.1/pkg/biology/FALCON/falcon_1.1
1012018-08-23OptiTypev1.3.1/pkg/biology/OptiType/OptiType_v1.3.1
1022018-08-23STAR-Fusionv1.4.0/pkg/biology/STAR-Fusion/STAR-Fusion_v1.4.0
1032018-08-23Canuv1.7.1/pkg/biology/Canu/Canu_v1.7.1
1042018-08-23Unicyclerv0.4.6/pkg/biology/Unicycler/Unicycler_v0.4.6
1052018-08-24ART20160605/pkg/biology/ART/ART_20160605
1062018-08-24Jellyfishv1.1.12/pkg/biology/Jellyfish/Jellyfish_v1.1.12
1072018-08-24Jellyfishv2.2.10/pkg/biology/Jellyfish/Jellyfish_v2.2.10
1082018-08-24Salmonv0.11.2/pkg/biology/Salmon/Salmon_v0.11.2
1092018-08-27Strelkav2.9.7/pkg/biology/Strelka/Strelka_v2.9.7
1102018-08-27Trinityv2.6.6/pkg/biology/Trinity/Trinity_v2.6.6
1112018-08-27MUMmerv4.0.0beta2/pkg/biology/MUMmer/MUMmer_v4.0.0beta2
1122018-08-28Trans-ABySSv1.5.2/pkg/biology/Trans-ABySS/Trans-ABySS_v1.5.2
1132018-08-28Trans-ABySSv2.0.1/pkg/biology/Trans-ABySS/Trans-ABySS_v2.0.1
1142018-08-29dotnetv2.1.401_sdk/pkg/biology/dotnet/dotnet_v2.1.401_sdk
1152018-08-30Subreadv1.6.2/pkg/biology/Subread/Subread_v1.6.2
1162018-08-30MEMEv5.0.1/pkg/biology/MEME/MEME_v5.0.1
1172018-08-31HTSLIBv1.9/pkg/biology/HTSLIB/HTSLIB_v1.9
1182018-08-31MaSuRCAv3.2.8/pkg/biology/MaSuRCA/MaSuRCA_v3.2.8
1192018-08-31Falcon20180808/pkg/biology/Falcon/Falcon_20180808
1202018-09-03CNVRulerv3.3.2/pkg/biology/CNVRuler/CNVRuler_v3.3.2
1212018-09-03RDXplorerv3.2/pkg/biology/RDXplorer/RDXplorer_v3.2
1222018-09-03Wessimv1.0/pkg/biology/Wessim/Wessim_v1.0
1232018-09-03Wessimbeta/pkg/biology/Wessim/Wessim_beta
1242018-09-03kentUtilsv370/pkg/biology/kentUtils/kentUtils_v370
1252018-09-05CNVnatorv0.3.3/pkg/biology/CNVnator/CNVnator_v0.3.3
1262018-09-07GATKv4.0.3.0/pkg/biology/GATK/GATK_v4.0.3.0
1272018-09-07GATKv4.0.8.1/pkg/biology/GATK/GATK_v4.0.8.1
1282018-09-07Ensembl-VEPv93/pkg/biology/Ensembl-VEP/Ensembl-VEP_v93
1292018-09-10StringTiev1.3.4d/pkg/biology/StringTie/StringTie_v1.3.4d
1302018-09-14Pythonv2.7.5/pkg/biology/Python/Python_v2.7.5
1312018-09-14CLCBio10_0_1_64.sh.46778.dir/pkg/biology/CLCBio/CLCGenomicsServer_10_0_1_64.sh.46778.dir
1322018-09-14CLCBio1.0.19/pkg/biology/CLCBio/PBS-DRMAA_1.0.19
1332018-09-17TranslatorXv1.1/pkg/biology/TranslatorX/TranslatorX_v1.1
1342018-09-17IQ-TREEv1.6.7/pkg/biology/IQ-TREE/IQ-TREE_v1.6.7

 

 

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