申請表 上下載資料 提問

軟體清單

軟體放置位置在/pkg/biology 下

IDDateProgramVervionPath
12011-01-27SOAP2v2.21/pkg/biology/SOAP2/SOAP2_v2.21
22012-07-06GemSIMv1.6/pkg/biology/GemSIM/GemSIM_v1.6
32013-07-08Athlates20140426/pkg/biology/Athlates/Athlates_20140426
42013-10-28SMaSHv1.0/pkg/biology/SMaSH/SMaSH_v1.0
52014-04-18MIRAv4.0.2/pkg/biology/MIRA/MIRA_v4.0.2
62014-04-30Cufflinksv2.2.1/pkg/biology/Cufflinks/Cufflinks_v2.2.1
72016-03-21Trimmomaticv0.36/pkg/biology/Trimmomatic/Trimmomatic_v0.36
82016-05-31bwa.kitv0.7.15/pkg/biology/bwa.kit/bwa.kit_v0.7.15
92016-06-29BEASTv1.8.4/pkg/biology/BEAST/BEAST_v1.8.4
102016-09-07CNV-Simv0.9.2/pkg/biology/CNV-Sim/CNV-Sim_v0.9.2
112016-10-04Qualimapv2.2.1/pkg/biology/Qualimap/Qualimap_v2.2.1
122016-11-04GEMv3.4/pkg/biology/GEM/GEM_v3.4
132017-03-25ONCOCNVv6.8/pkg/biology/ONCOCNV/ONCOCNV_v6.8
142017-06-02ExpansionHunterv2.5.5/pkg/biology/ExpansionHunter/ExpansionHunter_v2.5.5
152018-04-10BWAv0.7.17/pkg/biology/BWA/BWA_v0.7.17
162018-04-10Java10/pkg/biology/Java/jdk_10
172018-04-11SAMtoolsv1.8/pkg/biology/SAMtools/SAMtools_v1.8
182018-04-24Velvetv1.2.10/pkg/biology/Velvet/Velvet_v1.2.10
192018-04-24Bowtiev2.3.4.1/pkg/biology/Bowtie/Bowtie_v2.3.4.1
202018-04-25FREECv11.4/pkg/biology/FREEC/FREEC_v11.4
212018-04-26Pythonv3.6.5/pkg/biology/Python/Python_v3.6.5
222018-04-30DeepVariantv0.6.1_old/pkg/biology/DeepVariant/DeepVariant_v0.6.1_old
232018-05-11STARv2.6.0c/pkg/biology/STAR/STAR_v2.6.0c
242018-05-15OpenSlidev3.4.1/pkg/biology/OpenSlide/OpenSlide_v3.4.1
252018-05-15Perlv5.26.2/pkg/biology/Perl/Perl_v5.26.2
262018-05-15PLINKv1.9/pkg/biology/PLINK/PLINK_v1.9
272018-05-15Asperav3.8.0/pkg/biology/Aspera/Aspera_v3.8.0
282018-05-15Picardv2.18.2/pkg/biology/Picard/Picard_v2.18.2
292018-05-16BEDToolsv2.27.1/pkg/biology/BEDTools/BEDTools_v2.27.1
302018-05-16Pythonv2.7.14/pkg/biology/Python/Python_v2.7.14
312018-05-16RazerSv3.5.8/pkg/biology/RazerS/RazerS_v3.5.8
322018-05-16CPLEXv12.8.0/pkg/biology/CPLEX/CPLEX_v12.8.0
332018-05-16UCSC_Utilities20180515/pkg/biology/UCSC_Utilities/Utilities_20180515
342018-05-17HLA-HDv1.1.0/pkg/biology/HLA-HD/HLA-HD_v1.1.0
352018-05-17Mantav1.4.0/pkg/biology/Manta/Manta_v1.4.0
362018-05-17ANNOVAR20180416/pkg/biology/ANNOVAR/ANNOVAR_20180416
372018-05-18samblasterv0.1.24/pkg/biology/samblaster/samblaster_v0.1.24
382018-05-18sambambav0.6.7/pkg/biology/sambamba/sambamba_v0.6.7
392018-05-18DeepVariantv0.6.1/pkg/biology/DeepVariant/DeepVariant_v0.6.1
402018-05-21SRA_Toolkitv2.9.0/pkg/biology/SRA_Toolkit/SRAToolkit_v2.9.0
412018-05-21ClinEffv1.0h/pkg/biology/ClinEff/ClinEff_v1.0h
422018-05-21bcl2fastq2v2.20.0/pkg/biology/bcl2fastq2/bcl2fastq2_v2.20.0
432018-05-23TopHatv2.1.1/pkg/biology/TopHat/TopHat_v2.1.1
442018-05-23GCCv8.1.0/pkg/biology/GCC/GCC_v8.1.0
452018-05-25VCFtoolsv0.1.13/pkg/biology/VCFtools/VCFtools_v0.1.13
462018-05-25VarScanv2.3.9/pkg/biology/VarScan/VarScan_v2.3.9
472018-05-25SMALTv0.7.6/pkg/biology/SMALT/SMALT_v0.7.6
482018-05-25MEGAv7.0.14/pkg/biology/MEGA/MEGA_v7.0.14
492018-05-28MUMmerv3.23/pkg/biology/MUMmer/MUMmer_v3.23
502018-05-31gdc-clientv1.3.0/pkg/biology/gdc-client/gdc-client_v1.3.0
512018-06-14Strelkav2.9.4/pkg/biology/Strelka/Strelka_v2.9.4
522018-06-14Strelkav2.9.3/pkg/biology/Strelka/Strelka_v2.9.3
532018-06-22Rv3.5.0/pkg/biology/R/R_v3.5.0
542018-07-02HISAT2v2.1.0/pkg/biology/HISAT2/HISAT2_v2.1.0
552018-07-03dotnetv2.1.202_sdk/pkg/biology/dotnet/dotnet_v2.1.202_sdk
562018-07-04s3fsv1.83/pkg/biology/s3fs/s3fs_v1.83
572018-07-04BANv1/pkg/biology/BAN/BAN_v1
582018-07-04bamUtilv1.0.14/pkg/biology/bamUtil/bamUtil_v1.0.14
592018-07-05Perlv5.28.0/pkg/biology/Perl/Perl_v5.28.0
602018-07-05Mavenv3.5.4/pkg/biology/Maven/Maven_v3.5.4
612018-07-06Kouramiv0.9.6/pkg/biology/Kourami/Kourami_v0.9.6
622018-07-09MEGAv10.0.4/pkg/biology/MEGA/MEGA_v10.0.4
632018-07-13GATKv3.8/pkg/biology/GATK/GATK_v3.8
642018-07-13Pythonv2.7.15/pkg/biology/Python/Python_v2.7.15
652018-07-13BCFtoolsv1.8/pkg/biology/BCFtools/BCFtools_v1.8
662018-07-15s3cmdv2.0.2/pkg/biology/s3cmd/s3cmd_v2.0.2
672018-07-18HTSLIBv1.8/pkg/biology/HTSLIB/htslib_v1.8
682018-07-20CD-HITv4.6.8/pkg/biology/CD-HIT/CD-HIT_v4.6.8
692018-07-20HMMERv3.2.1/pkg/biology/HMMER/HMMER_v3.2.1
702018-07-24swarmv2.2.2/pkg/biology/swarm/swarm_v2.2.2
712018-07-25Rv3.2.3/pkg/biology/R/R_v3.2.3
722018-07-25MAFFTv7.402/pkg/biology/MAFFT/MAFFT_v7.402
732018-07-25RAxMLv8.2.12/pkg/biology/RAxML/RAxML_v8.2.12
742018-07-25FastTreev2.1.10/pkg/biology/FastTree/FastTree_v2.1.10
752018-07-25MrBayesv3.2.6/pkg/biology/MrBayes/MrBayes_v3.2.6
762018-07-26SQUIDv1.9g/pkg/biology/SQUID/SQUID_v1.9g
772018-07-27ROOTv6.14.02/pkg/biology/ROOT/ROOT_v6.14.02
782018-08-05Asperav3.7.7/pkg/biology/Aspera/Aspera_v3.7.7
792018-08-06Canvasv1.38.0/pkg/biology/Canvas/Canvas_v1.38.0
802018-08-09BEASTv1.10.1/pkg/biology/BEAST/BEAST_v1.10.1
812018-08-13Dellyv0.7.8/pkg/biology/Delly/Delly_v0.7.8
822018-08-14SAMtoolsv1.9/pkg/biology/SAMtools/SAMtools_v1.9
832018-08-14IGVv2.4.14/pkg/biology/IGV/IGV_v2.4.14
842018-08-15STARv2.6.1a/pkg/biology/STAR/STAR_v2.6.1a
852018-08-15HTSLIBv1.2.1/pkg/biology/HTSLIB/HTSLIB_v1.2.1
862018-08-15Pindelv0.2.5b8/pkg/biology/Pindel/Pindel_v0.2.5b8
872018-08-17HLAminerv1.3.1/pkg/biology/HLAminer/HLAminer_v1.3.1
882018-08-20Picardv2.18.11/pkg/biology/Picard/Picard_v2.18.11
892018-08-20FREECv11.5/pkg/biology/FREEC/FREEC_v11.5
902018-08-21VSEARCHv2.8.1/pkg/biology/VSEARCH/VSEARCH_v2.8.1
912018-08-21Mothurv1.40.5/pkg/biology/Mothur/Mothur_v1.40.5
922018-08-22Minimap2v2.12/pkg/biology/Minimap2/Minimap2_v2.12
932018-08-23OptiTypev1.3.1/pkg/biology/OptiType/OptiType_v1.3.1
942018-08-23STAR-Fusionv1.4.0/pkg/biology/STAR-Fusion/STAR-Fusion_v1.4.0
952018-08-23Canuv1.7.1/pkg/biology/Canu/Canu_v1.7.1
962018-08-23Unicyclerv0.4.6/pkg/biology/Unicycler/Unicycler_v0.4.6
972018-08-24ART20160605/pkg/biology/ART/ART_20160605
982018-08-24Jellyfishv1.1.12/pkg/biology/Jellyfish/Jellyfish_v1.1.12
992018-08-24Jellyfishv2.2.10/pkg/biology/Jellyfish/Jellyfish_v2.2.10
1002018-08-24Salmonv0.11.2/pkg/biology/Salmon/Salmon_v0.11.2
1012018-08-27Strelkav2.9.7/pkg/biology/Strelka/Strelka_v2.9.7
1022018-08-27Trinityv2.6.6/pkg/biology/Trinity/Trinity_v2.6.6
1032018-08-27MUMmerv4.0.0beta2/pkg/biology/MUMmer/MUMmer_v4.0.0beta2
1042018-08-28Trans-ABySSv1.5.2/pkg/biology/Trans-ABySS/Trans-ABySS_v1.5.2
1052018-08-28Trans-ABySSv2.0.1/pkg/biology/Trans-ABySS/Trans-ABySS_v2.0.1
1062018-08-29dotnetv2.1.401_sdk/pkg/biology/dotnet/dotnet_v2.1.401_sdk
1072018-08-30Subreadv1.6.2/pkg/biology/Subread/Subread_v1.6.2
1082018-08-30MEMEv5.0.1/pkg/biology/MEME/MEME_v5.0.1
1092018-08-31HTSLIBv1.9/pkg/biology/HTSLIB/HTSLIB_v1.9
1102018-08-31MaSuRCAv3.2.8/pkg/biology/MaSuRCA/MaSuRCA_v3.2.8
1112018-08-31Falcon20180808/pkg/biology/Falcon/Falcon_20180808
1122018-09-03CNVRulerv3.3.2/pkg/biology/CNVRuler/CNVRuler_v3.3.2
1132018-09-03RDXplorerv3.2/pkg/biology/RDXplorer/RDXplorer_v3.2
1142018-09-03Wessimv1.0/pkg/biology/Wessim/Wessim_v1.0
1152018-09-03kentUtilsv370/pkg/biology/kentUtils/kentUtils_v370
1162018-09-07GATKv4.0.3.0/pkg/biology/GATK/GATK_v4.0.3.0
1172018-09-07GATKv4.0.8.1/pkg/biology/GATK/GATK_v4.0.8.1
1182018-09-07Ensembl-VEPv93/pkg/biology/Ensembl-VEP/Ensembl-VEP_v93
1192018-09-10StringTiev1.3.4d/pkg/biology/StringTie/StringTie_v1.3.4d
1202018-09-14Pythonv2.7.5/pkg/biology/Python/Python_v2.7.5
1212018-09-17TranslatorXv1.1/pkg/biology/TranslatorX/TranslatorX_v1.1
1222018-09-17IQ-TREEv1.6.7/pkg/biology/IQ-TREE/IQ-TREE_v1.6.7
1232018-09-28Strelkav2.9.9/pkg/biology/Strelka/Strelka_v2.9.9
1242018-09-28MuSEv1.0rc/pkg/biology/MuSE/MuSE_v1.0rc
1252018-10-04FastQCv0.11.8/pkg/biology/FastQC/FastQC_v0.11.8
1262018-10-06BEASTv1.10.2/pkg/biology/BEAST/BEAST_v1.10.2
1272018-10-11FASTX-Toolkitv0.0.13/pkg/biology/FASTX-Toolkit/fastxtoolkit_v0.0.13
1282018-10-16Minicondav4.5.4/pkg/biology/Miniconda/Miniconda3_v4.5.4
1292018-10-16Minicondav4.5.4/pkg/biology/Miniconda/Miniconda2_v4.5.4
1302018-10-23Dockerv18.06.1/pkg/biology/Docker/Docker_v18.06.1
1312018-10-31PCGRv0.6.2.1/pkg/biology/PCGR/PCGR_v0.6.2.1
1322018-11-05deepToolsv3.1.1/pkg/biology/deepTools/deepTools_v3.1.1
1332018-11-08RSEMv1.3.1/pkg/biology/RSEM/RSEM_v1.3.1
1342018-11-21BBMapv38.32/pkg/biology/BBMap/BBMap_v38.32
1352018-11-23Unicyclerv0.4.7/pkg/biology/Unicycler/unicycler_v0.4.7
1362018-11-23SeqSerov1.0.1/pkg/biology/SeqSero/seqsero_v1.0.1
1372018-11-23isPcrv33/pkg/biology/isPcr/isPcr_v33
1382018-11-23SPAdesv3.11.1/pkg/biology/SPAdes/spades_v3.11.1
1392018-11-23Raconv1.3.1/pkg/biology/Racon/racon_v1.3.1
1402018-11-23Pilonv1.22/pkg/biology/Pilon/pilon_v1.22
1412018-12-10MUSCLEv3.8.31/pkg/biology/MUSCLE/muscle_v3.8.31
1422018-12-26Strelkav2.9.10/pkg/biology/Strelka/Strelka_v2.9.10
1432018-12-26Mantav1.5.0/pkg/biology/Manta/Manta_v1.5.0
1442018-12-26sambambav0.6.8/pkg/biology/sambamba/sambamba_v0.6.8
1452018-12-26fastpv0.19.5/pkg/biology/fastp/fastp_v0.19.5
1462018-12-27FastQCv0.11.7/pkg/biology/FastQC/FastQC_v0.11.7
1472018-12-27Stargazerv1.0.3/pkg/biology/Stargazer/Stargazer_v1.0.3
1482019-01-03GATKv4.0.12.0/pkg/biology/GATK/GATK_v4.0.12.0
1492019-01-03rtg-toolsv3.10/pkg/biology/rtg-tools/rtg-tools_v3.10
1502019-01-03bam-readcountv0.8.0/pkg/biology/bam-readcount/bam-readcount_v0.8.0
1512019-01-07hap.pyv0.3.10/pkg/biology/hap.py/hap.py_v0.3.10
1522019-01-08s3fsv1.84/pkg/biology/s3fs/s3fs_v1.84
1532019-01-08bac-denovo20190108/pkg/biology/bac-denovo/bac-denovo_20190108
1542019-01-18Dellyv0.7.9/pkg/biology/Delly/Delly_v0.7.9
1552019-01-18BreakDancerv1.4.5/pkg/biology/BreakDancer/BreakDancer_v1.4.5
1562019-01-19Canuv1.8/pkg/biology/Canu/Canu_v1.8
1572019-01-25pigzv2.4/pkg/biology/pigz/pigz_v2.4
1582019-01-30gffcomparev0.10.6/pkg/biology/gffcompare/gffcompare_v0.10.6
1592019-02-19Nirvanav2.0.9/pkg/biology/Nirvana/Nirvana_v2.0.9
1602019-02-20CNVnatorv0.3.3/pkg/biology/CNVnator/CNVnator_v0.3.3
1612019-02-20Homerv4.10/pkg/biology/Homer/Homer_v4.10
1622019-02-22GATKv4.1.0.0/pkg/biology/GATK/GATK_v4.1.0.0
1632019-02-26Dellyv0.8.1/pkg/biology/Delly/Delly_v0.8.1

 

 

生物小組

服務申請表

NGS網站