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軟體放置位置在/pkg/biology 下

IDDateProgramVervionPath
12016-02-02Bowtie2.2.6/pkg/biology/Bowtie/bowtie_2.2.6
22016-02-02BLAST+2.3.0+/pkg/biology/BLAST+/blast_2.3.0+
32016-02-02bedtools2.25.0/pkg/biology/bedtools/bedtools_2.25.0
42016-02-02ABySS1.9.0/pkg/biology/ABySS/abyss_1.9.0
52016-02-02ALLPATHS-LG52488/pkg/biology/ALLPATHS-LG/allpathslg_52488
62016-02-02GATK3.5/pkg/biology/GATK/gatk_3.5
72016-02-02BWA0.7.12/pkg/biology/BWA/bwa_0.7.12
82016-02-02BLAST2.2.9/pkg/biology/BLAST/blast_2.2.9
92016-02-04PyRosettamonolith/pkg/biology/PyRosetta/PyRosetta_monolith
102016-02-04PyRosettanamespace/pkg/biology/PyRosetta/PyRosetta_namespace
112016-02-19NAMD2.11_Linux-x86_64-ibverbs-smp/pkg/biology/NAMD/NAMD_2.11_Linux-x86_64-ibverbs-smp
122016-02-19NAMD2.11_Linux-x86_64-multicore/pkg/biology/NAMD/NAMD_2.11_Linux-x86_64-multicore
132016-02-19PHENIX1.10.1-2155-intel-linux-2.6-x86_64_old/pkg/biology/PHENIX/phenix_1.10.1-2155-intel-linux-2.6-x86_64_old
142016-02-24Rosetta2016.02/pkg/biology/Rosetta/rosetta_2016.02
152016-03-01SAMtools1.2+/pkg/biology/SAMtools/samtools_1.2+
162016-03-01SAMtools1.2/pkg/biology/SAMtools/samtools_1.2
172016-03-01SAMtools0.1.16/pkg/biology/SAMtools/samtools_0.1.16
182016-03-01MUMmer3.23/pkg/biology/MUMmer/MUMmer_3.23
192016-03-01bamUtilv1.0.13/pkg/biology/bamUtil/bamutil_v1.0.13
202016-03-01PyMOL1.3r1/pkg/biology/PyMOL/pymol_1.3r1
212016-03-02Bowtie1.1.2/pkg/biology/Bowtie/bowtie_1.1.2
222016-03-02plink1.07-x86_64/pkg/biology/plink/plink_1.07-x86_64
232016-03-02Perl5.16.3/pkg/biology/Perl/perl_5.16.3
242016-03-02GapFillerv1.10/pkg/biology/GapFiller/GapFiller_v1.10
252016-03-02miRDeep001_version/pkg/biology/miRDeep/mirdeep_001_version
262016-03-02miRDeepori_version/pkg/biology/miRDeep/mirdeep_ori_version
272016-03-02miRDeep2015_jan/pkg/biology/miRDeep/mirdeep_2015_jan
282016-03-02miRDeep002_version/pkg/biology/miRDeep/mirdeep_002_version
292016-03-02TopHat2.1.1/pkg/biology/TopHat/tophat_2.1.1
302016-03-02FASTX-TOOLkit0.0.14/pkg/biology/FASTX-TOOLkit/fastxtoolkit_0.0.14
312016-03-02Ensembl_pipeline83/pkg/biology/Ensembl_pipeline/Ensembl_83
322016-03-03HMMER3.1b2/pkg/biology/HMMER/hmmer_3.1b2
332016-03-03VelvetOptimiser2.2.5/pkg/biology/VelvetOptimiser/velvetoptimiser_2.2.5
342016-03-03Velvet1.2.10-cat40kmer250omp/pkg/biology/Velvet/velvet_1.2.10-cat40kmer250omp
352016-03-03Exonerate2.2.0/pkg/biology/Exonerate/exonerate_2.2.0
362016-03-03TMHMM2.0c/pkg/biology/TMHMM/tmhmm_2.0c
372016-03-03JellyFish2.2.4/pkg/biology/JellyFish/jellyfish_2.2.4
382016-03-03Trimmomatic0.35/pkg/biology/Trimmomatic/trimmomatic_0.35
392016-03-03Tandem_Repeats_Finder409/pkg/biology/Tandem_Repeats_Finder/trf_409
402016-03-04RMBlast2.2.28/pkg/biology/RMBlast/rmblastn_2.2.28
412016-03-04LaTex2015/pkg/biology/LaTex/latex_2015
422016-03-04NCBI_NGS_API1.2.3/pkg/biology/NCBI_NGS_API/ngs_1.2.3
432016-03-04NCBI_VDB2.5.8/pkg/biology/NCBI_VDB/ncbivdb_2.5.8
442016-03-04R3.2.3/pkg/biology/R/R_3.2.3
452016-03-07VirtualNanoLabATK-2015.0/pkg/biology/VirtualNanoLab/VNL_ATK-2015.0
462016-03-07UCSF_Chimera2016.03.01/pkg/biology/UCSF_Chimera/chimera_2016.03.01
472016-03-07UCSF_Chimeraalpha_2016_03_01/pkg/biology/UCSF_Chimera/chimera_alpha_2016_03_01
482016-03-07UCSF_Chimera1.10.2/pkg/biology/UCSF_Chimera/chimera_1.10.2
492016-03-07VMD1.9.2/pkg/biology/VMD/vmd_1.9.2
502016-03-07VMD1.9.2_text/pkg/biology/VMD/vmd_1.9.2_text
512016-03-07PHENIXdev_2306/pkg/biology/PHENIX/phenix_dev_2306
522016-03-08PyMOL1.8.0.0/pkg/biology/PyMOL/pymol_1.8.0.0
532016-03-08PyMOLphenix_1.8.0.0/pkg/biology/PyMOL/pymol_phenix_1.8.0.0
542016-03-11schrodinger2016-1/pkg/biology/schrodinger/schrodinger_2016-1
552016-03-11Desmond2015-4/pkg/biology/Desmond/schrodinger_2015-4
562016-03-11Desmondv44017/pkg/biology/Desmond/desmond_v44017
572016-03-15BFCv1/pkg/biology/BFC/bfc_v1
582016-03-15Rcorrector1.0.1/pkg/biology/Rcorrector/rcorrector_1.0.1
592016-03-15PEAR0.9.6/pkg/biology/PEAR/pear_0.9.6
602016-03-15PANDAseq2.8.1/pkg/biology/PANDAseq/pandaseq_2.8.1
612016-03-17Desmond3.6.1.1/pkg/biology/Desmond/desmond_3.6.1.1
622016-03-17R3.1.2/pkg/biology/R/R_3.1.2
632016-03-21SAMtools1.2+_silent/pkg/biology/SAMtools/samtools_1.2+_silent
642016-03-22ANNOVAR2016Feb01/pkg/biology/ANNOVAR/annovar_2016Feb01
652016-03-22BCFtools1.3/pkg/biology/BCFtools/bcftools_1.3
662016-03-22NGS_QC_Toolkitv2.3/pkg/biology/NGS_QC_Toolkit/ngsqctoolkit_v2.3
672016-03-22VarScanv2.3.9/pkg/biology/VarScan/varscan_v2.3.9
682016-03-22GMAP_GSNAP2015-12-31/pkg/biology/GMAP_GSNAP/gmap_2015-12-31
692016-03-22MIRA4.0.2/pkg/biology/MIRA/mira_4.0.2
702016-03-22Cufflinks2.2.1/pkg/biology/Cufflinks/cufflinks_2.2.1
712016-03-22MethPipe3.4.2/pkg/biology/MethPipe/methpipe_3.4.2
722016-03-22JOE4.2/pkg/biology/JOE/joe_4.2
732016-03-22MATLAB_RuntimeR2016a/pkg/biology/MATLAB_Runtime/MCR_R2016a
742016-03-22MACS22.1.1.20160309/pkg/biology/MACS2/MACS2_2.1.1.20160309
752016-03-22REDItools1.0.4/pkg/biology/REDItools/REDItools_1.0.4
762016-03-22SOAPdenovo2/pkg/biology/SOAPdenovo/SOAPdenovo_2
772016-03-22MACE1.2_old/pkg/biology/MACE/mace_1.2_old
782016-03-22Subread1.5.0p1/pkg/biology/Subread/subread_1.5.0p1
792016-03-22GeneMarksuit_v.4.30/pkg/biology/GeneMark/genemark_suit_v.4.30
802016-03-22Blat35/pkg/biology/Blat/blat_35
812016-03-23SDSL2.0.3/pkg/biology/SDSL/sdsl_2.0.3
822016-03-27ESS15.09-2/pkg/biology/ESS/ess_15.09-2
832016-03-29GeneTorrent3.8.7/pkg/biology/GeneTorrent/genetorrent_3.8.7
842016-03-31nano2.5.3/pkg/biology/nano/nano_2.5.3
852016-04-07pindelv0.2.5b8/pkg/biology/pindel/pindel_v0.2.5b8
862016-04-11FastQCv0.11.5/pkg/biology/FastQC/fastqc_v0.11.5
872016-04-13OPAM1.2.2/pkg/biology/OPAM/opam_1.2.2
882016-04-13OCaml4.02.3/pkg/biology/OCaml/ocaml_4.02.3
892016-04-13PhyloCSF20121028/pkg/biology/PhyloCSF/PhyloCSF_20121028
902016-04-26UCSC_Utilitiesv328/pkg/biology/UCSC_Utilities/ucscutilities_v328
912016-05-02SignalP4.0/pkg/biology/SignalP/signalp_4.0
922016-05-02GPS-CCD1.0/pkg/biology/GPS-CCD/gpsccd_1.0
932016-05-02Phobius101/pkg/biology/Phobius/phobius_101
942016-05-11swarm1.2.19/pkg/biology/swarm/swarm_1.2.19
952016-05-11UCLUST1.2.21/pkg/biology/UCLUST/uclustq_1.2.21
962016-05-11RAxML7.3.0/pkg/biology/RAxML/RAxML_7.3.0
972016-05-11RDPtools20160511/pkg/biology/RDPtools/RDPTools_20160511
982016-05-11MUSCLEv3.8.1551/pkg/biology/MUSCLE/muscle_v3.8.1551
992016-05-11cd-hit2007-0131/pkg/biology/cd-hit/cd-hit_2007-0131
1002016-05-11QIIME2/pkg/biology/QIIME/qiime_2
1012016-05-11SortMeRNA2.0/pkg/biology/SortMeRNA/sortmerna_2.0
1022016-05-11clearcut1.0.9/pkg/biology/clearcut/clearcut_1.0.9
1032016-05-11infernal1.0.2/pkg/biology/infernal/infernal_1.0.2
1042016-05-11SumaclustV1.0.00/pkg/biology/Sumaclust/sumapackage_V1.0.00
1052016-05-11cdbtools0.99/pkg/biology/cdbtools/cdbtools_0.99
1062016-05-11ChimeraSlayer20091205/pkg/biology/ChimeraSlayer/chimeraslayer_20091205
1072016-05-11USEARCH8.1.1861/pkg/biology/USEARCH/usearch_8.1.1861
1082016-05-17Octave4.0.2/pkg/biology/Octave/octave_4.0.2
1092016-05-17BLAST+blastdb/pkg/biology/BLAST+/update_blastdb
1102016-05-20IGV2.3.72/pkg/biology/IGV/IGV_2.3.72
1112016-05-24OpenMM7.0.0/pkg/biology/OpenMM/openmm_7.0.0
1122016-05-24ovito2.6.2-x86_64/pkg/biology/ovito/ovito_2.6.2-x86_64
1132016-06-24kentUntils20160624/pkg/biology/kentUntils/kentUtils_20160624
1142016-06-29tRNAscanSE-1.3.1/pkg/biology/tRNAscan/tRNAscan_SE-1.3.1
1152016-07-05InterProScan5.17-56.0/pkg/biology/InterProScan/interproscan_5.17-56.0
1162016-07-12ATSAS2.7.2-5/pkg/biology/ATSAS/ATSAS_2.7.2-5
1172016-07-22RTAX0.984/pkg/biology/RTAX/rtax_0.984
1182016-07-22cd-hit-otuillumina-0.0.1/pkg/biology/cd-hit-otu/cd-hit-otu_illumina-0.0.1
1192016-07-22InterProScan5.19-58.0/pkg/biology/InterProScan/interproscan_5.19-58.0
1202016-07-22JAVAjdk_1.8.0_92/pkg/biology/JAVA/java_jdk_1.8.0_92
1212016-07-22GeneMarkes_v.4.32/pkg/biology/GeneMark/genemark_es_v.4.32
1222016-08-04EMAN22.12/pkg/biology/EMAN2/EMAN2_2.12
1232016-08-11RELION1.4/pkg/biology/RELION/relion_1.4
1242016-08-12RELION1.4_intel/pkg/biology/RELION/relion_1.4_intel
1252016-08-19Tandem_Repeats_Finder404/pkg/biology/Tandem_Repeats_Finder/trf_404
1262016-08-22Augustus2.5.5/pkg/biology/Augustus/augustus_2.5.5
1272016-08-22RepeatMasker4.0.6/pkg/biology/RepeatMasker/repeatmasker_4.0.6
1282016-08-22MAKER2.31.8/pkg/biology/MAKER/maker_2.31.8
1292016-09-01Asperav3.6.2/pkg/biology/Aspera/aspera-connect_v3.6.2
1302016-09-08eHive2.4/pkg/biology/eHive/ensembl-hive_2.4
1312016-10-04SRAtoolkit2.7.0/pkg/biology/SRAtoolkit/sratoolkit_2.7.0
1322016-10-05GATK3.6/pkg/biology/GATK/gatk_3.6
1332016-10-21ARP_wARPwarp_7.6/pkg/biology/ARP_wARP/arp_warp_7.6
1342016-10-21cctbxdev_833/pkg/biology/cctbx/cctbx_dev_833
1352016-11-21mothur1.36.1/pkg/biology/mothur/mothur_1.36.1
1362016-11-22F-Seq1.84/pkg/biology/F-Seq/fseq_1.84
1372016-11-22F-Seq1.85/pkg/biology/F-Seq/fseq_1.85
1382016-12-02AmpliconNoise0/pkg/biology/AmpliconNoise/ampliconnoise_0
1392016-12-03gromacs2016.1_Oct28_d/pkg/biology/gromacs/gromacs_2016.1_Oct28_d
1402016-12-03plumed2.3b/pkg/biology/plumed/plumed_2.3b
1412016-12-03plumed2.2.3/pkg/biology/plumed/plumed_2.2.3
1422016-12-04gromacs4.6.7_d/pkg/biology/gromacs/gromacs_4.6.7_d
1432016-12-06python2.7.3/pkg/biology/python/python_2.7.3
1442016-12-07QIIME1.9.1/pkg/biology/QIIME/qiime_1.9.1
1452016-12-07USEARCH5.2.236/pkg/biology/USEARCH/usearch_5.2.236
1462016-12-19PLUMED2.2.3/pkg/biology/PLUMED/PLUMED_2.2.3
1472017-01-04Sambambav0.6.5/pkg/biology/Sambamba/sambamba_v0.6.5
1482017-01-17Wessim1.0/pkg/biology/Wessim/Wessim_1.0
1492017-01-17Wessimbeta/pkg/biology/Wessim/Wessim_beta
1502017-01-17GemSIMv1.6/pkg/biology/GemSIM/gemsim_v1.6
1512017-02-13AutoDockvina_1.1.2/pkg/biology/AutoDock/autodock_vina_1.1.2
1522017-02-13AutoDock4.2.6/pkg/biology/AutoDock/autodocksuite_4.2.6
1532017-03-09HISAT2.0.5/pkg/biology/HISAT/hisat_2.0.5
1542017-03-22EXCAVATORv2.2/pkg/biology/EXCAVATOR/EXCAVATOR_v2.2
1552017-03-22CoNIFERv0.2.2/pkg/biology/CoNIFER/conifer_v0.2.2
1562017-03-22XHMM20160104/pkg/biology/XHMM/xhmm_20160104
1572017-03-22Control-FREECv10.5/pkg/biology/Control-FREEC/control-freec_v10.5
1582017-03-22CNV-seq20140812/pkg/biology/CNV-seq/cnv-seq_20140812
1592017-03-22R3.3.3/pkg/biology/R/R_3.3.3
1602017-04-17Torrent_Suite5.2.2-sp1/pkg/biology/Torrent_Suite/TS_5.2.2-sp1
1612017-04-19SMRTv2.3.0/pkg/biology/SMRT/smrt_v2.3.0
1622017-04-28MAFFT7.310/pkg/biology/MAFFT/mafft_7.310
1632017-05-04SMALT0.7.6/pkg/biology/SMALT/smalt_0.7.6
1642017-05-05SAMtools1.4/pkg/biology/SAMtools/samtools_1.4
1652017-05-18VCFtools0.1.13/pkg/biology/VCFtools/vcftools_0.1.13
1662017-05-24BBMap37.25/pkg/biology/BBMap/bbmap_37.25
1672017-05-24mpiBWA1.0/pkg/biology/mpiBWA/mpiBWA_1.0
1682017-05-31freebayesv1.1.0/pkg/biology/freebayes/freebayes_v1.1.0
1692017-06-06CNVnatorv0.3.3/pkg/biology/CNVnator/CNVnator_v0.3.3
1702017-06-21DECoNv1.0.1/pkg/biology/DECoN/DECoN_v1.0.1
1712017-07-10Picard_Tools2.1.0/pkg/biology/Picard_Tools/picardtools_2.1.0
1722017-07-10GATK3.7/pkg/biology/GATK/gatk_3.7
1732017-08-01JAVAjdk_1.6.0_45/pkg/biology/JAVA/java_jdk_1.6.0_45
1742017-08-02BEASTv1.8.4/pkg/biology/BEAST/BEAST_v1.8.4
1752017-08-08Maven2.2.1/pkg/biology/Maven/maven_2.2.1
1762017-08-08Maven3.5.0/pkg/biology/Maven/maven_3.5.0
1772017-08-09JAVAjdk_1.7.0_80/pkg/biology/JAVA/java_jdk_1.7.0_80
1782017-08-10gromacs4.6.7/pkg/biology/gromacs/gromacs_4.6.7
1792017-08-11QualiMapv2.2.1/pkg/biology/QualiMap/qualimap_v2.2.1
1802017-08-22CWLv1.0.2/pkg/biology/CWL/cwl_v1.0.2
1812017-08-29FSLv5.0.10/pkg/biology/FSL/fsl_v5.0.10
1822017-09-06bam-readcountv0.8.0/pkg/biology/bam-readcount/bam-readcount_v0.8.0
1832017-09-29TNTv1.5/pkg/biology/TNT/tnt64_v1.5
1842017-09-30PhyML3.1/pkg/biology/PhyML/phyml_3.1
1852017-10-18Bazelparty/pkg/biology/Bazel/third_party
1862017-10-18tensorflowtemp/pkg/biology/tensorflow/tensorflow_temp
1872017-10-24Strelka22.8.4/pkg/biology/Strelka2/strelka_2.8.4
1882017-10-27R3.2.4/pkg/biology/R/R_3.2.4
1892017-10-27R2.12.2/pkg/biology/R/R_2.12.2
1902017-10-30RDXplorerv3.2/pkg/biology/RDXplorer/rdxplorer_v3.2
1912017-10-30bedtoolsv2.26.0/pkg/biology/bedtools/bedtools_v2.26.0
1922017-10-30GATK3.8/pkg/biology/GATK/gatk_3.8
1932017-10-30Ensembl_VEPv90/pkg/biology/Ensembl_VEP/ensemblvep_v90
1942017-10-30VCFtoolsv0.1.15/pkg/biology/VCFtools/vcftools_v0.1.15
1952017-10-31SAMtools1.6/pkg/biology/SAMtools/samtools_1.6
1962017-11-07BamToolsv2.4.0/pkg/biology/BamTools/bamtools_v2.4.0
1972017-11-09BWA0.7.17/pkg/biology/BWA/bwa_0.7.17
1982017-11-10bcl2fastq2v2.20.0/pkg/biology/bcl2fastq2/bcl2fastq2_v2.20.0
1992017-11-10Picard_Tools2.14.1/pkg/biology/Picard_Tools/picardtools_2.14.1
2002017-11-15HLA-HD1.1.1/pkg/biology/HLA-HD/HLA-HD_1.1.1
2012017-11-27Samblasterv0.1.24/pkg/biology/Samblaster/Samblaster_v0.1.24
2022017-11-27Canvas1.30_master/pkg/biology/Canvas/Canvas_1.30_master
2032017-11-27Mantav1.2.2/pkg/biology/Manta/Manta_v1.2.2
2042017-11-27BSSeeker2/pkg/biology/BSSeeker/bsseeker_2
2052017-11-29HDF51.8.19/pkg/biology/HDF5/HDF5_1.8.19
2062017-12-04PBJelly215.8.24/pkg/biology/PBJelly2/PBSuite_15.8.24
2072017-12-08SMRTv5.0.1/pkg/biology/SMRT/smrt_v5.0.1
2082017-12-12Anaconda3v5.0.1/pkg/biology/Anaconda3/Anaconda3_v5.0.1
2092017-12-18Chromeapps/pkg/biology/Chrome/default_apps
2102017-12-20JAVAjdk_1.8.0_162/pkg/biology/JAVA/java_jdk_1.8.0_162
2112017-12-22RTG_ToolsTools_v3.8.4/pkg/biology/RTG_Tools/RTG_Tools_v3.8.4
2122018-01-16JAVAjdk_9.0.1/pkg/biology/JAVA/java_jdk_9.0.1
2132018-01-17Torrent_Variant_Caller5.6.0/pkg/biology/Torrent_Variant_Caller/TVC_5.6.0
2142018-01-19GATK4.0.0.0/pkg/biology/GATK/gatk_4.0.0.0
2152018-01-22SAMtoolsv0.2.6/pkg/biology/SAMtools/Tabix_v0.2.6
2162018-01-22Torrent_Variant_Caller5.8.0/pkg/biology/Torrent_Variant_Caller/TVC_5.8.0
2172018-01-24python3.5.1/pkg/biology/python/python_3.5.1
2182018-01-31R3.4.2/pkg/biology/R/R_3.4.2
2192018-02-01Ensembl_VEPVEP_v91/pkg/biology/Ensembl_VEP/Ensembl_VEP_v91
2202018-02-05MyCC20170301/pkg/biology/MyCC/MyCC_20170301
2212018-02-26python2.7.14/pkg/biology/python/python_2.7.14
2222018-02-27python2.7.5/pkg/biology/python/python_2.7.5
2232018-03-13UCSF_Chimera1.12/pkg/biology/UCSF_Chimera/chimera_1.12
2242018-04-17OncoCNVv6.8/pkg/biology/OncoCNV/OncoCNV_v6.8
2252018-04-24Rosetta2018.09/pkg/biology/Rosetta/rosetta_2018.09
2262018-04-26CrossMapv0.2.7/pkg/biology/CrossMap/CrossMap_v0.2.7
2272018-05-07python2.7.15/pkg/biology/python/python_2.7.15
2282018-05-07s3cmdv2.0.1/pkg/biology/s3cmd/s3cmd_v2.0.1
2292018-05-07s3fsv1.83/pkg/biology/s3fs/s3fs_v1.83
2302018-05-11STARv2.6.0c/pkg/biology/STAR/STAR_v2.6.0c
2312018-05-25Trinity2.1.1/pkg/biology/Trinity/trinity_2.1.1
2322018-05-29gdc-clientv1.3.0/pkg/biology/gdc-client/gdc-client_v1.3.0

 

 

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